/**
 * General configuration
 */
YAHOO.dasBrowser.genome.karyotypeStructure.dsn.selectedDsn.id = "Homo_sapiens.GRCh37.reference";
//YAHOO.dasBrowser.genome.karyotypeStructure.dsn.selectedDsn.id = "Rattus_norvegicus.RGSC3.4.reference";
//YAHOO.dasBrowser.genome.karyotypeStructure.dsn.selectedDsn.id = "Canis_familiaris.BROADD2.reference";
//YAHOO.dasBrowser.genome.karyotypeStructure.karyotype.zoomConf.defaultValues = [1,153264619,154085448];
//YAHOO.dasBrowser.genome.karyotypeStructure.entryPoints.userEntryPoints = [6,8,11];
YAHOO.dasBrowser.genome.panel.userContainers = ['annotationListView', 'sequenceView', 'zoomView', 'bandView', 'chromosomeView', 'karyotypeView']; //Possible containers ... ['annotationListView', 'sequenceView', 'zoomView', 'bandView', 'chromosomeView', 'karyotypeView', 'copyNumberView', 'test']

/**
 * Sources
 */
//panel options: karyotype, chromosome, band, zoom. Karyotype includes, chromosome, band and zoom. Chromosome includes band and zoom.
//representation options: mark, line, chart, track

/*
var source = new Object();
source.id = 'DS_000';
source.url ='http://www.ebi.ac.uk/das-srv/genomicdas/das/eqtl_rat_cis_fat/features';
source.name ='eqtl_rat_cis_fat';
source.label =['ENSEMBL'];
source.description ='eqtl_rat_cis_fat';
source.representation ='track';
source.panel ='karyotype';
source.ntLimit =null;
source.types = [];
source.stylesheet = true;
YAHOO.dasBrowser.genome.annotations.sources.push(source);

var source = new Object();
source.id = 'DS_000';
source.url ='http://www.ebi.ac.uk/das-srv/genomicdas/das/eqtl_rat_cis_kidney/features';
source.name ='eqtl_rat_cis_kidney';
source.label =['ENSEMBL'];
source.description ='eqtl_rat_cis_kidney';
source.representation ='track';
source.panel ='karyotype';
source.ntLimit =null;
source.types = [];
source.stylesheet = true;
YAHOO.dasBrowser.genome.annotations.sources.push(source);


var source = new Object();
source.id = 'DS_000';
source.url ='http://www.ebi.ac.uk/das-srv/genomicdas/das/eqtl_rat_trans_fat/features';
source.name ='eqtl_rat_trans_fat';
source.label =['ENSEMBL'];
source.description ='eqtl_rat_trans_fat';
source.representation ='chart';
source.panel ='karyotype';
source.ntLimit =null;
source.types = [];
source.stylesheet = true;
YAHOO.dasBrowser.genome.annotations.sources.push(source);

var source = new Object();
source.id = 'DS_000';
source.url ='http://www.ebi.ac.uk/das-srv/genomicdas/das/eqtl_rat_trans_kidney/features';
source.name ='eqtl_rat_trans_kidney';
source.label =['ENSEMBL'];
source.description ='eqtl_rat_trans_kidney';
source.representation ='chart';
source.panel ='karyotype';
source.ntLimit =null;
source.types = [];
source.stylesheet = true;
YAHOO.dasBrowser.genome.annotations.sources.push(source);

var source = new Object();
source.id = 'DS_000';
source.url ='http://www.ebi.ac.uk/das-srv/genomicdas/das/nidb_cnvs_rat/features';
source.name ='nidb_cnvs_rat';
source.label =['ENSEMBL'];
source.description ='Rat Copy Number Variations, supplied by the Netherlands Institute for Developmental Biologyt';
source.representation ='track';
source.panel ='karyotype';
source.ntLimit =null;
source.types = [];
source.stylesheet = true;
YAHOO.dasBrowser.genome.annotations.sources.push(source);

var source = new Object();
source.id = 'DS_000';
source.url ='http://das.sanger.ac.uk/das/rnoprimiRNA/features';
source.name ='rnoprimiRNA';
source.label =['ENSEMBL'];
source.description ='A DAS source that provides access to the annotation data of primary transcripts of rat miRNAs.';
source.representation ='track';
source.panel ='karyotype';
source.ntLimit =null;
source.types = [];
source.stylesheet = true;
YAHOO.dasBrowser.genome.annotations.sources.push(source);

var source = new Object();
source.id = 'DS_000';
source.url ='http://www.ebi.ac.uk/das-srv/genomicdas/das/astd_snp_rat_34/features';
source.name ='astd_snp_rat_34';
source.label =['ENSEMBL'];
source.description ='ASTD SNP features, offered on rat chromosome co-ordinates.';
source.representation ='mark';
source.panel ='zoom';
source.ntLimit =100000000;
source.types = [];
source.stylesheet = false;
YAHOO.dasBrowser.genome.annotations.sources.push(source);

var source = new Object();
source.id = 'DS_000';
source.url ='http://www.ebi.ac.uk/das-srv/genomicdas/das/astd_exon_rat_34/features';
source.name ='astd_exon_rat_34';
source.label =['ENSEMBL'];
source.description ='ASTD exon features grouped into transcripts, offered on rat chromosome co-ordinates.';
source.representation ='track';
source.panel ='zoom';
source.ntLimit =1000000;
source.types = [];
source.stylesheet = false;
YAHOO.dasBrowser.genome.annotations.sources.push(source);


var source = new Object();
source.id = 'DS_000';
source.url ='http://www.ebi.ac.uk/das-srv/genomicdas/das/gnf_expression/features';
source.name ='gnf_expression';
source.label =['ENSEMBL'];
source.description ='Rat Tissue Expression data from the Genomics Institute of the Novartis Research Foundation.';
source.representation ='track';
source.panel ='zoom';
source.ntLimit =1000000;
source.types = [];
source.stylesheet = true;
YAHOO.dasBrowser.genome.annotations.sources.push(source);

var source = new Object();
source.id = 'DS_000';
source.url ='http://www.ensembl.org/das/Rattus_norvegicus.RGSC3.4.transcript/features';
source.name ='transcript';
source.label =['ENSEMBL'];
source.description ='	Annotation source for Rattus_norvegicus transcript.';
source.representation ='track';
source.panel ='zoom';
source.ntLimit =1000000;
source.types = [];
source.stylesheet = false;
YAHOO.dasBrowser.genome.annotations.sources.push(source);

*/




	
